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1

Object Command Language: a formalism to build molecular models and to analyze structural parameters in macromolecules, with applications to nucleic acids

Jacques Gabarro-Arpa, Jean A.H. Cognet, Marc Le Bret

Journal:

Journal of Molecular Graphics

Year:

1992

Language:

english

File:

PDF, 814 KB

english, 1992

2

A database of 32 DNA triplets to study triple helices by molecular mechanics and dynamics

J.M. Piriou, Ch. Ketterlé, J. Gabarro-Arpa, J.A.H. Cognet, M. Le Bret

Journal:

Biophysical Chemistry

Year:

1994

Language:

english

File:

PDF, 1.67 MB

english, 1994

3

MORMIN: A quasi-Newtonian energy minimizer fitting the nuclear overhauser data

JoëL Pothier, Jacques Gabarro-Arpa, Marc Le Bret

Journal:

Journal of Computational Chemistry

Year:

1993

Language:

english

File:

PDF, 1.01 MB

english, 1993

4

Clustering of a molecular dynamics trajectory with a Hamming distance

Jacques Gabarro-Arpa, Roger Revilla

Journal:

Computers & Chemistry

Year:

2000

Language:

english

File:

PDF, 107 KB

english, 2000

5

A central partition of molecular conformational space: I. Basic structures

Jacques Gabarro-Arpa

Journal:

Computational Biology and Chemistry

Year:

2003

Language:

english

File:

PDF, 307 KB

english, 2003

6

Cadira: an object-oriented platform for modelling molecules and analyzing simulations

J. Gabarro-Arpa, M. Le Bret, A. Marcouyoux

Journal:

Computers & Chemistry

Year:

1997

Language:

english

File:

PDF, 316 KB

english, 1997

7

Hamming distance geometry of a protein conformational space: Application to the clustering of a 4-ns molecular dynamics trajectory of the HIV-1 integrase catalytic core

Cyril Laboulais, Mohammed Ouali, Marc Le Bret, Jacques Gabarro-Arpa

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 461 KB

english, 2002

8

A Central Partition of Molecular Conformational Space. III. Combinatorial Determination of the Volume Spanned by a Molecular System

Jacques Gabarro-Arpa

Journal:

Journal of Mathematical Chemistry

Year:

2007

Language:

english

File:

PDF, 238 KB

english, 2007

9

A central partition of molecular conformational space. IV. Extracting information from the graph of cells

Jacques Gabarro-Arpa

Journal:

Journal of Mathematical Chemistry

Year:

2008

Language:

english

File:

PDF, 246 KB

english, 2008

10

Solution Structure of an Oncogenic DNA Duplex, the K-rasGene and the Sequence Containing a Central C·A or A·G Mismatch as a Function of pH: Nuclear Magnetic Resonance and Molecular Dynamics Studies

Y. Boulard, J.A.H. Cognet, J. Gabarro-Arpa, M Le Bret, C. Carbonnaux, G.V. Fazakerley

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 880 KB

english, 1995

11

Thermal perturbation differential spectra of ribonucleic acids. III. Chain length effect

Denise Frechet, Jaime Gabarro-Arpa

Journal:

Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis

Year:

1980

Language:

english

File:

PDF, 777 KB

english, 1980

12

About the large fluctuations observed using gas-phase molecular dynamics in the K-ras gene containing a mismatch

M. Ouali, J. Pothier, J. Gabarro-Arpa, M. Le Bret

Journal:

Year:

1995

Language:

english

File:

PDF, 256 KB

english, 1995

13

Soloution conformation of an olionucleotide containing a G.G mismatch determined by nuclear manetic resonance and molecular mechanics

Cognet, J.A.H., Gabarro-Arpa, J., Bret, M.Le, Marel, G.A.van der, Boom, J.H.van, Fazakerley, G.V.

Journal:

Nucleic Acids Research

Year:

1991

Language:

english

File:

PDF, 858 KB

english, 1991

14

[IEEE 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - San Francisco, CA, USA (1-5 Sept. 2004)] The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - A central partition of molecular conformational space. II. embedding 3D structures

Gabarro-Arpa, J.

Year:

2004

Language:

english

File:

PDF, 1.77 MB

english, 2004

15

Binding of Net-Fla, a Netropsin-Flavin Hybrid Molecule, to DNA: Molecular Mechanics and Dynamics Studies in vacuo and in Water Solution

Ketterlé, Christophe, Gabarro-Arpa, Jacques, Ouali, Mohammed, Bouziane, Mohammed, Auclair, Christian, Helissey, Philippe, Giorgi-Renault, Sylviane, Bret, Marc Le

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 947 KB

english, 1996

16

Molecular Mechanics and Dynamics of an Abasic Frameshift in DNA and Comparison to NMR Data

Cognet, J. A.H., Gabarro-Arpa, J., Cuniasse, Ph., Fazakerley, G. V., Bret, M. Le

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1990

Language:

english

File:

PDF, 1.04 MB

english, 1990

17

The GTm 6 AC sequence is overwound and bent

Fazakerley, G. V., Gabarro-Arpa, J., Lebret, M., Guy, A., Guschlbauer, W.

Journal:

Nucleic Acids Research

Year:

1989

Language:

english

File:

PDF, 1.37 MB

english, 1989

18

A Molecular Mechanics and Dynamics Study of Alternate Triple-Helices Involving the Integrase-Binding Site of the HIV-1 Virus and Oligonucleotides Having a 3′-3′ Internucleotide Junction

Ouali, Mohammed, Bouziane, Mohammed, Ketterlé, Christophe, Gabarro-Arpa, Jacques, Auclair, Christian, Bret, Marc Le

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 1.26 MB

english, 1996

19

Thermal perturbation differential spectra of ribonucleic acids. U. Nearest neighbour interactions

Frechet, Denise, Ehrlich, Ricardo, Remy, Pierre, Gabarro-Arpa, J.

Journal:

Nucleic Acids Research

Year:

1979

Language:

english

File:

PDF, 609 KB

english, 1979

20

The pH dependent configurations of the C.A mispair in DNA

Boulard, Y., Cognet, J.A.H., Gabarro-Arpa, J., Le Bret, M., Sowers, L.C., Fazakerley, G.V.

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 811 KB

english, 1992

21

An algorithm for studying cooperative transitions in DNA

Marcaud, H., Gabarro-Arpa, J., Ehrlich, R., Reiss, C.

Journal:

Nucleic Acids Research

Year:

1986

Language:

english

File:

PDF, 301 KB

english, 1986

22

Key for protein coding sequence identification: computer analysis of codon strategy

Rodier, Francis, Gabarro-Arpa, Jaime, Ehrlich, Ricardo, Reiss, Claude

Journal:

Nucleic Acids Research

Year:

1982

Language:

english

File:

PDF, 427 KB

english, 1982

23

THe solution structure of a DNA hairpan containin a loop of three thymidines determined by nuclear manetic resonance and molecular mechanics

Boulard, Y., Gabarro-Arpa, J., Cognet, J.A.H., Bret, M.Le, Guy, A., Téoule, R., Guschlbauer, W., Fazakerley, G.V.

Journal:

Nucleic Acids Research

Year:

1991

Language:

english

File:

PDF, 816 KB

english, 1991

24

Physical characteristics in eucaryotic promoters

Bensimhon, M., Gabarro-Arpa, J., Ehrlich, R., Reiss, C.

Journal:

Nucleic Acids Research

Year:

1983

Language:

english

File:

PDF, 1022 KB

english, 1983

25

[AIP Advances in biomolecular simulations - Obernai (France) (1991)] AIP Conference Proceedings - MORCAD, an Object-Oriented Molecular Modelling Package Running on IBM RS/6000 and SGI 4Dxxx Workstations

Le Bret, M., Gabarro-Arpa, J., Gilbert, J. Ch., Lemarechal, Cl.

Year:

1991

File:

PDF, 362 KB

1991